Microbiota Thesis Pipeline

Bioinformatics workflow and reproducible analyses

Author

Mayela Fosado-Mendoza

Published

January 1, 2026

Photograph by Dr. Alfredo Varela-Echavarría

Welcome

This repository contains the bioinformatics pipeline developed during my undergraduate thesis focused on the body wall microbiota of Deroceras laeve.

It organizes computational workflows, analytical scripts, and selected outputs generated throughout the project.

Pipeline Scope

Sequence preprocessing and quality control
Taxonomic profiling of microbial communities
Functional annotation and KEGG-based exploration
Statistical analyses in R
Reproducible visualizations and figures

Project Purpose

This resource was created to document the thesis workflow.

Academic Context

Undergraduate thesis in Microbiology
Universidad Autónoma de Querétaro (UAQ), Mexico

External supervisor: Dr. Alfredo Varela-Echavarría (INB, UNAM)

Computational resources from Laboratorio Nacional de Visualización Científica Avanzada (LAVIS), UNAM Juriquilla.

Explore

Use the navigation panel to browse workflow steps, analyses, figures, and project notes.

Contact

Mayela Fosado-Mendoza
GitHub: Mayfm Email: maye.fosado@gmail.com